J4_6HRM_005
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_005 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0774
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|G|1803
6HRM|1|1|G|1804
6HRM|1|1|A|1805
6HRM|1|1|A|1806
6HRM|1|1|G|1807
*
6HRM|1|1|C|1822
6HRM|1|1|G|1823
6HRM|1|1|C|1824
6HRM|1|1|G|1825
*
6HRM|1|1|C|1829
6HRM|1|1|A|1830
6HRM|1|1|G|1831
*
6HRM|1|1|C|1843
6HRM|1|1|G|1844
6HRM|1|1|U|1845
6HRM|1|1|A|1846
6HRM|1|1|C|1847
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L24
Coloring options: