J4_6HRM_006
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 6HRM|1|1|U|2159, 6HRM|1|1|A|2160
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.2004
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HRM|1|1|C|2107
6HRM|1|1|A|2108
6HRM|1|1|A|2109
6HRM|1|1|G|2110
*
6HRM|1|1|C|2130
6HRM|1|1|G|2131
6HRM|1|1|A|2132
6HRM|1|1|A|2133
6HRM|1|1|G|2134
*
6HRM|1|1|C|2141
6HRM|1|1|G|2142
6HRM|1|1|A|2143
6HRM|1|1|G|2144
*
6HRM|1|1|C|2156
6HRM|1|1|G|2157
6HRM|1|1|U|2158
6HRM|1|1|U|2159
6HRM|1|1|A|2160
6HRM|1|1|A|2161
6HRM|1|1|G|2162
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain e
- 50S ribosomal protein L35
Coloring options: