J4_6HRM_012
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6HRM|1|1|U|3477
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_012 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1056
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HRM|1|1|C|3339
6HRM|1|1|U|3340
6HRM|1|1|2MG|3341
*
6HRM|1|1|C|3411
6HRM|1|1|G|3412
*
6HRM|1|1|C|3430
6HRM|1|1|C|3431
6HRM|1|1|U|3432
6HRM|1|1|A|3433
6HRM|1|1|A|3434
6HRM|1|1|G|3435
6HRM|1|1|G|3436
6HRM|1|1|U|3437
6HRM|1|1|A|3438
6HRM|1|1|G|3439
*
6HRM|1|1|C|3473
6HRM|1|1|G|3474
6HRM|1|1|A|3475
6HRM|1|1|A|3476
6HRM|1|1|U|3477
6HRM|1|1|G|3478
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
Coloring options: