J4_6HTQ_003

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAAG*CGCC*GGA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HTQ_003 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1591

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6HTQ|1|A|U|340
6HTQ|1|A|G|341
6HTQ|1|A|A|342
6HTQ|1|A|A|343
6HTQ|1|A|G|344
*
6HTQ|1|A|C|360
6HTQ|1|A|G|361
6HTQ|1|A|C|362
6HTQ|1|A|C|363
*
6HTQ|1|A|G|367
6HTQ|1|A|G|368
6HTQ|1|A|A|369
*
6HTQ|1|A|U|381
6HTQ|1|A|G|382
6HTQ|1|A|U|383
6HTQ|1|A|A|384
6HTQ|1|A|G|385

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24