J4_6I0Y_001

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

6I0Y|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I0Y_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0918

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

6I0Y|1|A|C|268
6I0Y|1|A|C|269
*
6I0Y|1|A|G|370
6I0Y|1|A|A|371
6I0Y|1|A|G|372
6I0Y|1|A|U|373
6I0Y|1|A|A|374
6I0Y|1|A|G|375
*
6I0Y|1|A|U|399
6I0Y|1|A|G|400
6I0Y|1|A|A|401
6I0Y|1|A|A|402
6I0Y|1|A|U|403
6I0Y|1|A|A|404
6I0Y|1|A|U|405
6I0Y|1|A|G|406
*
6I0Y|1|A|C|421
6I0Y|1|A|A|422
6I0Y|1|A|A|423
6I0Y|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28