J4_6I0Y_011

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I0Y_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0684

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6I0Y|1|A|G|2643
6I0Y|1|A|G|2644
6I0Y|1|A|G|2645
6I0Y|1|A|C|2646
*
6I0Y|1|A|G|2674
6I0Y|1|A|A|2675
6I0Y|1|A|C|2676
*
6I0Y|1|A|G|2731
6I0Y|1|A|G|2732
6I0Y|1|A|A|2733
6I0Y|1|A|A|2734
6I0Y|1|A|G|2735
*
6I0Y|1|A|U|2769
6I0Y|1|A|G|2770
6I0Y|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14