J4_6I7O_010
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GG*CU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6I7O_010 not in the Motif Atlas
- Homologous match to J4_8P9A_016
- Geometric discrepancy: 0.0974
- The information below is about J4_8P9A_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_24280.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6I7O|1|BQ|G|1674
6I7O|1|BQ|G|1675
*
6I7O|1|BQ|C|1693
6I7O|1|BQ|U|1694
*
6I7O|1|BQ|A|1752
6I7O|1|BQ|G|1753
*
6I7O|1|BQ|U|1772
6I7O|1|BQ|C|1773
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AI
- 60S ribosomal protein L38
- Chain BL
- 60S ribosomal protein L22-A
- Chain BN
- 60S ribosomal protein L34-A
Coloring options: