J4_6I7O_013

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

6I7O|1|BQ|A|2657, 6I7O|1|BQ|U|2752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|BQ|C|2654
6I7O|1|BQ|U|2655
6I7O|1|BQ|A|2656
6I7O|1|BQ|A|2657
6I7O|1|BQ|G|2658
*
6I7O|1|BQ|U|2712
6I7O|1|BQ|U|2713
6I7O|1|BQ|G|2714
*
6I7O|1|BQ|C|2741
6I7O|1|BQ|C|2742
*
6I7O|1|BQ|G|2751
6I7O|1|BQ|U|2752
6I7O|1|BQ|G|2753

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain BJ

60S ribosomal protein L21-A