J4_6I7O_018
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|1452, 6I7O|1|YQ|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6I7O_018 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1623
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|YQ|C|1451
6I7O|1|YQ|A|1452
6I7O|1|YQ|A|1453
6I7O|1|YQ|A|1454
6I7O|1|YQ|U|1455
6I7O|1|YQ|A|1456
6I7O|1|YQ|U|1457
*
6I7O|1|YQ|A|1475
6I7O|1|YQ|G|1476
*
6I7O|1|YQ|U|1877
6I7O|1|YQ|G|1878
6I7O|1|YQ|A|1879
6I7O|1|YQ|U|1880
*
6I7O|1|YQ|A|2352
6I7O|1|YQ|G|2353
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XX
- 60S ribosomal protein L17-A
- Chain YC
- 60S ribosomal protein L31-A
- Chain YF
- 60S ribosomal protein L19-A
Coloring options: