J4_6I7O_023

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6I7O|1|YQ|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7O_023 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.2454

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|YQ|C|2192
6I7O|1|YQ|U|2193
6I7O|1|YQ|G|2194
*
6I7O|1|YQ|C|2248
6I7O|1|YQ|G|2249
*
6I7O|1|YQ|C|2267
6I7O|1|YQ|U|2268
6I7O|1|YQ|U|2269
6I7O|1|YQ|A|2270
6I7O|1|YQ|A|2271
6I7O|1|YQ|G|2272
6I7O|1|YQ|G|2273
6I7O|1|YQ|U|2274
6I7O|1|YQ|A|2275
6I7O|1|YQ|G|2276
*
6I7O|1|YQ|U|2310
6I7O|1|YQ|G|2311
6I7O|1|YQ|A|2312
6I7O|1|YQ|A|2313
6I7O|1|YQ|U|2314
6I7O|1|YQ|G|2315

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain XS

60S ribosomal protein L41-B

Chain XW

60S ribosomal protein L2-A