J4_6I7O_029
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6I7O|1|mb|U|8, 6I7O|1|mb|U|48, 6I7O|1|mb|C|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6I7O_029 not in the Motif Atlas
- Homologous match to J4_6UFG_001
- Geometric discrepancy: 0.2159
- The information below is about J4_6UFG_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6I7O|1|mb|G|7
6I7O|1|mb|U|8
6I7O|1|mb|G|9
6I7O|1|mb|G|10
*
6I7O|1|mb|C|26
6I7O|1|mb|G|27
6I7O|1|mb|U|28
*
6I7O|1|mb|A|44
6I7O|1|mb|A|45
6I7O|1|mb|G|46
6I7O|1|mb|G|47
6I7O|1|mb|U|48
6I7O|1|mb|C|49
6I7O|1|mb|G|50
*
6I7O|1|mb|C|66
6I7O|1|mb|C|67
Current chains
- Chain mb
- P/E hybrid tRNA
Nearby chains
- Chain 2b
- Small subunit ribosomal RNA; SSU rRNA
- Chain XP
- 60S ribosomal protein L42-A
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