J4_6I7V_004

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

6I7V|1|BA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7V_004 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1398

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6I7V|1|BA|G|115
6I7V|1|BA|A|116
6I7V|1|BA|G|117
6I7V|1|BA|U|118
6I7V|1|BA|A|119
6I7V|1|BA|A|120
6I7V|1|BA|U|121
6I7V|1|BA|G|122
*
6I7V|1|BA|U|239
6I7V|1|BA|G|240
*
6I7V|1|BA|C|286
6I7V|1|BA|U|287
6I7V|1|BA|A|288
6I7V|1|BA|G|289
*
6I7V|1|BA|C|311
6I7V|1|BA|C|312

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BQ

30S ribosomal protein S17