J4_6I7V_021

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

6I7V|1|DA|G|1271, 6I7V|1|DA|A|1272, 6I7V|1|DA|U|1273, 6I7V|1|DA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7V_021 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0603

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6I7V|1|DA|C|1270
6I7V|1|DA|G|1271
6I7V|1|DA|A|1272
6I7V|1|DA|U|1273
6I7V|1|DA|A|1274
6I7V|1|DA|A|1275
6I7V|1|DA|A|1276
*
6I7V|1|DA|U|1294
6I7V|1|DA|C|1295
*
6I7V|1|DA|G|1645
6I7V|1|DA|C|1646
6I7V|1|DA|U|1647
6I7V|1|DA|U|1648
*
6I7V|1|DA|A|2009
6I7V|1|DA|G|2010

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DO

50S ribosomal protein L17

Chain DT

50S ribosomal protein L22