J4_6I7V_023

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

6I7V|1|DA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6I7V_023 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0617

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6I7V|1|DA|U|1313
6I7V|1|DA|C|1314
*
6I7V|1|DA|G|1338
6I7V|1|DA|G|1339
6I7V|1|DA|U|1340
6I7V|1|DA|G|1341
6I7V|1|DA|A|1342
6I7V|1|DA|G|1343
*
6I7V|1|DA|C|1404
6I7V|1|DA|U|1405
*
6I7V|1|DA|A|1597
6I7V|1|DA|A|1598
6I7V|1|DA|U|1599
6I7V|1|DA|C|1600
6I7V|1|DA|G|1601
6I7V|1|DA|U|1602
6I7V|1|DA|A|1603

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DU

50S ribosomal protein L23