J4_6IP5_007
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GACUG*CAAAGCA*UGUGAUU*AUGAAC
- Length
- 25 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP5|1|1A|G|3634
6IP5|1|1A|A|3635
6IP5|1|1A|C|3636
6IP5|1|1A|U|3637
6IP5|1|1A|G|3638
*
6IP5|1|1A|C|3650
6IP5|1|1A|A|3651
6IP5|1|1A|A|3652
6IP5|1|1A|A|3653
6IP5|1|1A|G|3654
6IP5|1|1A|C|3655
6IP5|1|1A|A|3656
*
6IP5|1|1A|U|3688
6IP5|1|1A|G|3689
6IP5|1|1A|U|3690
6IP5|1|1A|G|3691
6IP5|1|1A|A|3692
6IP5|1|1A|U|3693
6IP5|1|1A|U|3694
*
6IP5|1|1A|A|3821
6IP5|1|1A|U|3822
6IP5|1|1A|G|3823
6IP5|1|1A|A|3824
6IP5|1|1A|A|3825
6IP5|1|1A|C|3826
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2h
- 60S ribosomal protein L41
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: