J4_6IP5_008
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUG*CG*UCUUAAGGUAG*UGAAUG
- Length
- 22 nucleotides
- Bulged bases
- 6IP5|1|1A|U|3773, 6IP5|1|1A|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6IP5_008 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.228
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP5|1|1A|C|3696
6IP5|1|1A|U|3697
6IP5|1|1A|G|3698
*
6IP5|1|1A|C|3752
6IP5|1|1A|G|3753
*
6IP5|1|1A|U|3770
6IP5|1|1A|C|3771
6IP5|1|1A|U|3772
6IP5|1|1A|U|3773
6IP5|1|1A|A|3774
6IP5|1|1A|A|3775
6IP5|1|1A|G|3776
6IP5|1|1A|G|3777
6IP5|1|1A|U|3778
6IP5|1|1A|A|3779
6IP5|1|1A|G|3780
*
6IP5|1|1A|U|3814
6IP5|1|1A|G|3815
6IP5|1|1A|A|3816
6IP5|1|1A|A|3817
6IP5|1|1A|U|3818
6IP5|1|1A|G|3819
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2h
- 60S ribosomal protein L41
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
- Chain zy
- Transfer RNA; tRNA
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