J4_6IP5_015
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 6IP5|1|1A|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6IP5_015 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.1579
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6IP5|1|1A|G|2406
6IP5|1|1A|G|2407
6IP5|1|1A|U|2408
6IP5|1|1A|U|2409
6IP5|1|1A|C|2410
*
6IP5|1|1A|G|2434
6IP5|1|1A|G|2435
6IP5|1|1A|U|2436
6IP5|1|1A|C|2437
6IP5|1|1A|A|2438
6IP5|1|1A|G|2439
*
6IP5|1|1A|U|2538
6IP5|1|1A|C|2539
*
6IP5|1|1A|G|2777
6IP5|1|1A|G|2778
6IP5|1|1A|C|2779
6IP5|1|1A|C|2780
6IP5|1|1A|G|2781
6IP5|1|1A|U|2782
6IP5|1|1A|A|2783
6IP5|1|1A|C|2784
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 2L
- 60S ribosomal protein L19
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2a
- 60S ribosomal protein L34
- Chain 2b
- 60S ribosomal protein L35
- Chain 2d
- 60S ribosomal protein L37
- Chain 2e
- 60S ribosomal protein L38
- Chain 2f
- 60S ribosomal protein L39
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