J4_6IP6_002

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6IP6|1|1A|C|216, 6IP6|1|1A|C|217, 6IP6|1|1A|A|218, 6IP6|1|1A|G|219

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|C|196
6IP6|1|1A|A|197
6IP6|1|1A|A|198
6IP6|1|1A|G|199
*
6IP6|1|1A|C|215
6IP6|1|1A|C|216
6IP6|1|1A|C|217
6IP6|1|1A|A|218
6IP6|1|1A|G|219
6IP6|1|1A|C|220
6IP6|1|1A|C|221
6IP6|1|1A|C|222
*
6IP6|1|1A|G|226
6IP6|1|1A|A|227
6IP6|1|1A|C|228
*
6IP6|1|1A|G|240
6IP6|1|1A|G|241
6IP6|1|1A|U|242
6IP6|1|1A|A|243
6IP6|1|1A|G|244

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1F

60S ribosomal protein L4

Chain 2S

60S ribosomal protein L26