J4_6IP6_006
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGG*UUGUGAA*UGGAAAG*UC
- Length
- 19 nucleotides
- Bulged bases
- 6IP6|1|1A|A|2696
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP6|1|1A|G|2618
6IP6|1|1A|G|2619
6IP6|1|1A|G|2620
*
6IP6|1|1A|U|2636
6IP6|1|1A|U|2637
6IP6|1|1A|G|2638
6IP6|1|1A|U|2639
6IP6|1|1A|G|2640
6IP6|1|1A|A|2641
6IP6|1|1A|A|2642
*
6IP6|1|1A|U|2692
6IP6|1|1A|G|2693
6IP6|1|1A|G|2694
6IP6|1|1A|A|2695
6IP6|1|1A|A|2696
6IP6|1|1A|A|2697
6IP6|1|1A|G|2698
*
6IP6|1|1A|U|2718
6IP6|1|1A|C|2719
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2O
- 60S ribosomal protein L22
- Chain 2a
- 60S ribosomal protein L34
- Chain 2e
- 60S ribosomal protein L38
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