J4_6IP6_009

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

6IP6|1|1A|A|4234, 6IP6|1|1A|G|4329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP6|1|1A|C|4231
6IP6|1|1A|U|4232
6IP6|1|1A|A|4233
6IP6|1|1A|A|4234
6IP6|1|1A|G|4235
*
6IP6|1|1A|U|4289
6IP6|1|1A|U|4290
6IP6|1|1A|G|4291
*
6IP6|1|1A|C|4318
6IP6|1|1A|C|4319
*
6IP6|1|1A|G|4328
6IP6|1|1A|G|4329
6IP6|1|1A|G|4330

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1G

60S ribosomal protein L5

Chain 2N

60S ribosomal protein L21

Chain 2i

60S ribosomal protein L36a