J4_6IP8_001
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCGG*CUAAG
- Length
- 21 nucleotides
- Bulged bases
- 6IP8|1|1A|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|C|111
6IP8|1|1A|C|112
*
6IP8|1|1A|G|278
6IP8|1|1A|A|279
6IP8|1|1A|G|280
6IP8|1|1A|U|281
6IP8|1|1A|C|282
6IP8|1|1A|G|283
*
6IP8|1|1A|C|304
6IP8|1|1A|A|305
6IP8|1|1A|A|306
6IP8|1|1A|A|307
6IP8|1|1A|G|308
6IP8|1|1A|C|309
6IP8|1|1A|G|310
6IP8|1|1A|G|311
*
6IP8|1|1A|C|326
6IP8|1|1A|U|327
6IP8|1|1A|A|328
6IP8|1|1A|A|329
6IP8|1|1A|G|330
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2H
- 60S ribosomal protein L15
- Chain 2b
- 60S ribosomal protein L35
- Chain 2c
- 60S ribosomal protein L36
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