J4_6IP8_004
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAUAU*AGG*CAUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 6IP8|1|1A|A|2366, 6IP8|1|1A|U|2369, 6IP8|1|1A|A|2370, 6IP8|1|1A|U|2828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|C|2365
6IP8|1|1A|A|2366
6IP8|1|1A|A|2367
6IP8|1|1A|A|2368
6IP8|1|1A|U|2369
6IP8|1|1A|A|2370
6IP8|1|1A|U|2371
*
6IP8|1|1A|A|2389
6IP8|1|1A|G|2390
6IP8|1|1A|G|2391
*
6IP8|1|1A|C|2824
6IP8|1|1A|A|2825
6IP8|1|1A|U|2826
6IP8|1|1A|G|2827
6IP8|1|1A|U|2828
6IP8|1|1A|U|2829
*
6IP8|1|1A|A|3856
6IP8|1|1A|G|3857
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2J
- 60S ribosomal protein L17
- Chain 2L
- 60S ribosomal protein L19
- Chain 2X
- 60S ribosomal protein L31
Coloring options: