J4_6IP8_005
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUC*GGAGU*AAUC*GGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|1A|G|2443
6IP8|1|1A|U|2444
6IP8|1|1A|C|2445
*
6IP8|1|1A|G|2515
6IP8|1|1A|G|2516
6IP8|1|1A|A|2517
6IP8|1|1A|G|2518
6IP8|1|1A|U|2519
*
6IP8|1|1A|A|2536
6IP8|1|1A|A|2537
6IP8|1|1A|U|2538
6IP8|1|1A|C|2539
*
6IP8|1|1A|G|2777
6IP8|1|1A|G|2778
6IP8|1|1A|C|2779
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2a
- 60S ribosomal protein L34
- Chain 2e
- 60S ribosomal protein L38
- Chain 2f
- 60S ribosomal protein L39
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