J4_6IP8_013
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUGC*GUU
- Length
- 25 nucleotides
- Bulged bases
- 6IP8|1|2m|A|672, 6IP8|1|2m|A|1083, 6IP8|1|2m|C|1085, 6IP8|1|2m|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6IP8|1|2m|A|671
6IP8|1|2m|A|672
6IP8|1|2m|G|673
*
6IP8|1|2m|C|1032
6IP8|1|2m|G|1033
6IP8|1|2m|A|1034
6IP8|1|2m|A|1035
6IP8|1|2m|A|1036
6IP8|1|2m|G|1037
*
6IP8|1|2m|C|1078
6IP8|1|2m|C|1079
6IP8|1|2m|A|1080
6IP8|1|2m|U|1081
6IP8|1|2m|A|1082
6IP8|1|2m|A|1083
6IP8|1|2m|A|1084
6IP8|1|2m|C|1085
6IP8|1|2m|G|1086
6IP8|1|2m|A|1087
6IP8|1|2m|U|1088
6IP8|1|2m|G|1089
6IP8|1|2m|C|1090
*
6IP8|1|2m|G|1159
6IP8|1|2m|U|1160
6IP8|1|2m|U|1161
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2h
- 60S ribosomal protein L41
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
- Chain 3C
- 40S ribosomal protein S26
- Chain 3K
- 40S ribosomal protein S13
- Chain 3L
- 40S ribosomal protein S14
- Chain 3M
- 40S ribosomal protein S15a
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