J4_6IP8_019

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6IP8|1|1A|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|1A|G|2618
6IP8|1|1A|G|2619
*
6IP8|1|1A|U|2637
6IP8|1|1A|G|2638
6IP8|1|1A|U|2639
6IP8|1|1A|G|2640
6IP8|1|1A|A|2641
6IP8|1|1A|A|2642
*
6IP8|1|1A|U|2692
6IP8|1|1A|G|2693
6IP8|1|1A|G|2694
6IP8|1|1A|A|2695
6IP8|1|1A|A|2696
6IP8|1|1A|A|2697
6IP8|1|1A|G|2698
*
6IP8|1|1A|U|2718
6IP8|1|1A|C|2719

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2L

60S ribosomal protein L19

Chain 2O

60S ribosomal protein L22

Chain 2a

60S ribosomal protein L34

Chain 2e

60S ribosomal protein L38