J4_6IP8_025

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UG*UG*CC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6IP8|1|zz|G|133
6IP8|1|zz|A|134
*
6IP8|1|zz|U|290
6IP8|1|zz|G|291
*
6IP8|1|zz|U|302
6IP8|1|zz|G|303
*
6IP8|1|zz|C|314
6IP8|1|zz|C|315

Current chains

Chain zz

HCV-IRES RNA

Nearby chains

Chain 2o

40S ribosomal protein S3a

Chain 3C

40S ribosomal protein S26