3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAG*CAUAACGU*ACCAAAGAGG*UCUUGC
Length
27 nucleotides
Bulged bases
6LKQ|1|s|A|182, 6LKQ|1|s|C|183, 6LKQ|1|s|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6LKQ|1|s|G|142
6LKQ|1|s|A|143
6LKQ|1|s|G|144
*
6LKQ|1|s|C|178
6LKQ|1|s|A|179
6LKQ|1|s|U|180
6LKQ|1|s|A|181
6LKQ|1|s|A|182
6LKQ|1|s|C|183
6LKQ|1|s|G|184
6LKQ|1|s|U|185
*
6LKQ|1|s|A|192
6LKQ|1|s|C|193
6LKQ|1|s|C|194
6LKQ|1|s|A|195
6LKQ|1|s|A|196
6LKQ|1|s|A|197
6LKQ|1|s|G|198
6LKQ|1|s|A|199
6LKQ|1|s|G|200
6LKQ|1|s|G|201
*
6LKQ|1|s|U|216
6LKQ|1|s|C|217
6LKQ|1|s|U|218
6LKQ|1|s|U|219
6LKQ|1|s|G|220
6LKQ|1|s|C|221

Current chains

Chain s
16S ribosomal RNA

Nearby chains

Chain S
30S ribosomal protein S20

Coloring options:

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