J4_6LKQ_002
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CAUAACGU*ACCAAAGAGG*UCUUGC
- Length
- 27 nucleotides
- Bulged bases
- 6LKQ|1|s|A|182, 6LKQ|1|s|C|183, 6LKQ|1|s|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LKQ|1|s|G|142
6LKQ|1|s|A|143
6LKQ|1|s|G|144
*
6LKQ|1|s|C|178
6LKQ|1|s|A|179
6LKQ|1|s|U|180
6LKQ|1|s|A|181
6LKQ|1|s|A|182
6LKQ|1|s|C|183
6LKQ|1|s|G|184
6LKQ|1|s|U|185
*
6LKQ|1|s|A|192
6LKQ|1|s|C|193
6LKQ|1|s|C|194
6LKQ|1|s|A|195
6LKQ|1|s|A|196
6LKQ|1|s|A|197
6LKQ|1|s|G|198
6LKQ|1|s|A|199
6LKQ|1|s|G|200
6LKQ|1|s|G|201
*
6LKQ|1|s|U|216
6LKQ|1|s|C|217
6LKQ|1|s|U|218
6LKQ|1|s|U|219
6LKQ|1|s|G|220
6LKQ|1|s|C|221
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain S
- 30S ribosomal protein S20
Coloring options: