J4_6LKQ_003
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6LKQ|1|s|C|576, 6LKQ|1|s|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6LKQ_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0913
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6LKQ|1|s|G|575
6LKQ|1|s|C|576
6LKQ|1|s|G|577
*
6LKQ|1|s|C|764
6LKQ|1|s|G|765
6LKQ|1|s|A|766
6LKQ|1|s|A|767
6LKQ|1|s|A|768
6LKQ|1|s|G|769
*
6LKQ|1|s|C|810
6LKQ|1|s|C|811
6LKQ|1|s|G|812
6LKQ|1|s|U|813
6LKQ|1|s|A|814
6LKQ|1|s|A|815
6LKQ|1|s|A|816
6LKQ|1|s|C|817
6LKQ|1|s|G|818
6LKQ|1|s|A|819
6LKQ|1|s|U|820
6LKQ|1|s|G|821
*
6LKQ|1|s|C|879
6LKQ|1|s|C|880
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S8
- Chain J
- 30S ribosomal protein S11
- Chain K
- 30S ribosomal protein S12
- Chain N
- 30S ribosomal protein S15
- Chain P
- 30S ribosomal protein S17
- Chain T
- 30S ribosomal protein S21
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: