3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6LKQ_005 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0608
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6LKQ|1|t|G|297
6LKQ|1|t|G|298
6LKQ|1|t|A|299
6LKQ|1|t|A|300
6LKQ|1|t|G|301
*
6LKQ|1|t|C|316
6LKQ|1|t|G|317
6LKQ|1|t|C|318
6LKQ|1|t|G|319
*
6LKQ|1|t|C|323
6LKQ|1|t|A|324
6LKQ|1|t|G|325
*
6LKQ|1|t|C|337
6LKQ|1|t|G|338
6LKQ|1|t|U|339
6LKQ|1|t|A|340
6LKQ|1|t|C|341

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain W
50S ribosomal protein L4
Chain c
50S ribosomal protein L24

Coloring options:


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