J4_6LKQ_006
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6LKQ_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1375
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6LKQ|1|t|C|601
6LKQ|1|t|A|602
6LKQ|1|t|A|603
6LKQ|1|t|G|604
*
6LKQ|1|t|C|624
6LKQ|1|t|G|625
6LKQ|1|t|A|626
6LKQ|1|t|A|627
6LKQ|1|t|G|628
*
6LKQ|1|t|C|635
6LKQ|1|t|G|636
6LKQ|1|t|A|637
6LKQ|1|t|G|638
*
6LKQ|1|t|C|650
6LKQ|1|t|G|651
6LKQ|1|t|U|652
6LKQ|1|t|U|653
6LKQ|1|t|A|654
6LKQ|1|t|A|655
6LKQ|1|t|G|656
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L35
Coloring options: