J4_6LKQ_008

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6LKQ|1|t|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6LKQ_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0947

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6LKQ|1|t|G|1310
6LKQ|1|t|G|1311
6LKQ|1|t|U|1312
6LKQ|1|t|U|1313
6LKQ|1|t|C|1314
*
6LKQ|1|t|G|1338
6LKQ|1|t|G|1339
6LKQ|1|t|U|1340
6LKQ|1|t|G|1341
6LKQ|1|t|A|1342
6LKQ|1|t|G|1343
*
6LKQ|1|t|C|1404
6LKQ|1|t|U|1405
*
6LKQ|1|t|A|1597
6LKQ|1|t|A|1598
6LKQ|1|t|U|1599
6LKQ|1|t|C|1600
6LKQ|1|t|G|1601
6LKQ|1|t|U|1602
6LKQ|1|t|A|1603
6LKQ|1|t|C|1604

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23

Chain k

50S ribosomal protein L34