J4_6LKQ_012
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6LKQ|1|t|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6LKQ_012 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1263
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6LKQ|1|t|C|1833
6LKQ|1|t|U|1834
6LKQ|1|t|G|1835
*
6LKQ|1|t|C|1905
6LKQ|1|t|G|1906
*
6LKQ|1|t|C|1924
6LKQ|1|t|C|1925
6LKQ|1|t|U|1926
6LKQ|1|t|A|1927
6LKQ|1|t|A|1928
6LKQ|1|t|G|1929
6LKQ|1|t|G|1930
6LKQ|1|t|U|1931
6LKQ|1|t|A|1932
6LKQ|1|t|G|1933
*
6LKQ|1|t|C|1967
6LKQ|1|t|G|1968
6LKQ|1|t|A|1969
6LKQ|1|t|A|1970
6LKQ|1|t|U|1971
6LKQ|1|t|G|1972
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Viomycin
- Chain AA
- Viomycin
- Chain BA
- Viomycin
- Chain U
- 50S ribosomal protein L2
- Chain s
- Small subunit ribosomal RNA; SSU rRNA
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