J4_6LQV_001

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAUUAAAUC*GCCC*GUAACGGG*CCGG

Length

25 nucleotides

Bulged bases

6LQV|1|SA|A|105, 6LQV|1|SA|C|308, 6LQV|1|SA|A|359, 6LQV|1|SA|C|361

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQV|1|SA|C|99
6LQV|1|SA|A|100
6LQV|1|SA|U|101
6LQV|1|SA|U|102
6LQV|1|SA|A|103
6LQV|1|SA|A|104
6LQV|1|SA|A|105
6LQV|1|SA|U|106
6LQV|1|SA|C|107
*
6LQV|1|SA|G|307
6LQV|1|SA|C|308
6LQV|1|SA|C|309
6LQV|1|SA|C|310
*
6LQV|1|SA|G|357
6LQV|1|SA|U|358
6LQV|1|SA|A|359
6LQV|1|SA|A|360
6LQV|1|SA|C|361
6LQV|1|SA|G|362
6LQV|1|SA|G|363
6LQV|1|SA|G|364
*
6LQV|1|SA|C|381
6LQV|1|SA|C|382
6LQV|1|SA|G|383
6LQV|1|SA|G|384

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A