J4_6LSR_002

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|196
6LSR|1|2|A|197
6LSR|1|2|A|198
6LSR|1|2|G|199
*
6LSR|1|2|C|215
6LSR|1|2|C|216
6LSR|1|2|C|217
6LSR|1|2|A|218
6LSR|1|2|G|219
6LSR|1|2|C|220
6LSR|1|2|C|221
6LSR|1|2|C|222
*
6LSR|1|2|G|226
6LSR|1|2|A|227
6LSR|1|2|C|228
*
6LSR|1|2|G|240
6LSR|1|2|G|241
6LSR|1|2|U|242
6LSR|1|2|A|243
6LSR|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26