J4_6LSR_003

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

6LSR|1|2|G|1271, 6LSR|1|2|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|C|981
6LSR|1|2|U|982
6LSR|1|2|C|983
*
6LSR|1|2|G|1070
6LSR|1|2|C|1071
6LSR|1|2|C|1072
*
6LSR|1|2|G|1240
6LSR|1|2|C|1241
6LSR|1|2|G|1242
6LSR|1|2|C|1243
*
6LSR|1|2|G|1268
6LSR|1|2|G|1269
6LSR|1|2|A|1270
6LSR|1|2|G|1271
6LSR|1|2|C|1272
6LSR|1|2|G|1273

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain v

60S ribosomal protein L6

Chain w

60S ribosomal protein L7