J4_6LSR_006

3D structure

PDB id

6LSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6LSR|1|2|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSR|1|2|G|2618
6LSR|1|2|G|2619
*
6LSR|1|2|U|2637
6LSR|1|2|G|2638
6LSR|1|2|U|2639
6LSR|1|2|G|2640
6LSR|1|2|A|2641
6LSR|1|2|A|2642
*
6LSR|1|2|U|2692
6LSR|1|2|G|2693
6LSR|1|2|G|2694
6LSR|1|2|A|2695
6LSR|1|2|A|2696
6LSR|1|2|A|2697
6LSR|1|2|G|2698
*
6LSR|1|2|U|2718
6LSR|1|2|C|2719

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38

Chain a

60S ribosomal protein L19

Chain d

60S ribosomal protein L22