J4_6LSS_007

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6LSS_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.111

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

6LSS|1|2|G|3634
6LSS|1|2|A|3635
6LSS|1|2|C|3636
6LSS|1|2|U|3637
6LSS|1|2|G|3638
*
6LSS|1|2|C|3650
6LSS|1|2|A|3651
6LSS|1|2|A|3652
6LSS|1|2|A|3653
6LSS|1|2|G|3654
*
6LSS|1|2|U|3690
6LSS|1|2|G|3691
6LSS|1|2|A|3692
6LSS|1|2|U|3693
6LSS|1|2|U|3694
*
6LSS|1|2|A|3821
6LSS|1|2|U|3822
6LSS|1|2|G|3823
6LSS|1|2|A|3824
6LSS|1|2|A2M|3825
6LSS|1|2|C|3826

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8