J4_6LU8_007

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6LU8_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.1331

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

6LU8|1|2|G|3634
6LU8|1|2|A|3635
6LU8|1|2|C|3636
6LU8|1|2|U|3637
6LU8|1|2|G|3638
*
6LU8|1|2|C|3650
6LU8|1|2|A|3651
6LU8|1|2|A|3652
6LU8|1|2|A|3653
6LU8|1|2|G|3654
*
6LU8|1|2|U|3690
6LU8|1|2|G|3691
6LU8|1|2|A|3692
6LU8|1|2|U|3693
6LU8|1|2|U|3694
*
6LU8|1|2|A|3821
6LU8|1|2|U|3822
6LU8|1|2|G|3823
6LU8|1|2|A|3824
6LU8|1|2|A2M|3825
6LU8|1|2|C|3826

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8