J4_6M62_003
3D structure
- PDB id
- 6M62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6M62|1|1|A|1452, 6M62|1|1|U|1455, 6M62|1|1|A|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6M62_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1142
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6M62|1|1|C|1451
6M62|1|1|A|1452
6M62|1|1|A|1453
6M62|1|1|A|1454
6M62|1|1|U|1455
6M62|1|1|A|1456
6M62|1|1|U|1457
*
6M62|1|1|A|1475
6M62|1|1|G|1476
*
6M62|1|1|U|1877
6M62|1|1|G|1878
6M62|1|1|A|1879
6M62|1|1|U|1880
*
6M62|1|1|A|2352
6M62|1|1|G|2353
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain P
- 60S ribosomal protein L17-A
- Chain R
- 60S ribosomal protein L19-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain d
- 60S ribosomal protein L31-A
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