J4_6MPF_003
3D structure
- PDB id
- 6MPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6MPF|1|A|A|798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6MPF_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0429
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6MPF|1|A|G|558
6MPF|1|A|G|559
6MPF|1|A|G|560
*
6MPF|1|A|C|747
6MPF|1|A|G|748
6MPF|1|A|A|749
6MPF|1|A|A|750
6MPF|1|A|A|751
6MPF|1|A|G|752
*
6MPF|1|A|C|793
6MPF|1|A|C|794
6MPF|1|A|C|795
6MPF|1|A|U|796
6MPF|1|A|A|797
6MPF|1|A|A|798
6MPF|1|A|A|799
6MPF|1|A|C|800
6MPF|1|A|G|801
6MPF|1|A|A|802
6MPF|1|A|U|803
6MPF|1|A|G|804
*
6MPF|1|A|C|856
6MPF|1|A|C|857
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
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