J4_6MTB_006

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6MTB|1|5|A|2366, 6MTB|1|5|U|2369, 6MTB|1|5|A|2370, 6MTB|1|5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTB|1|5|OMC|2365
6MTB|1|5|A|2366
6MTB|1|5|A|2367
6MTB|1|5|A|2368
6MTB|1|5|U|2369
6MTB|1|5|A|2370
6MTB|1|5|U|2371
*
6MTB|1|5|A|2389
6MTB|1|5|G|2390
6MTB|1|5|G|2391
*
6MTB|1|5|C|2824
6MTB|1|5|A|2825
6MTB|1|5|U|2826
6MTB|1|5|G|2827
6MTB|1|5|U|2828
6MTB|1|5|U|2829
*
6MTB|1|5|A|3856
6MTB|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31