J4_6MTC_005

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6MTC|1|5|A|2366, 6MTC|1|5|U|2369, 6MTC|1|5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTC|1|5|OMC|2365
6MTC|1|5|A|2366
6MTC|1|5|A|2367
6MTC|1|5|A|2368
6MTC|1|5|U|2369
6MTC|1|5|A|2370
6MTC|1|5|U|2371
*
6MTC|1|5|A|2389
6MTC|1|5|G|2390
6MTC|1|5|G|2391
*
6MTC|1|5|C|2824
6MTC|1|5|A|2825
6MTC|1|5|U|2826
6MTC|1|5|G|2827
6MTC|1|5|U|2828
6MTC|1|5|U|2829
*
6MTC|1|5|A|3856
6MTC|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31