J4_6MTD_004

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6MTD|1|5|A|2366, 6MTD|1|5|U|2369, 6MTD|1|5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|OMC|2365
6MTD|1|5|A|2366
6MTD|1|5|A|2367
6MTD|1|5|A|2368
6MTD|1|5|U|2369
6MTD|1|5|A|2370
6MTD|1|5|U|2371
*
6MTD|1|5|A|2389
6MTD|1|5|G|2390
6MTD|1|5|G|2391
*
6MTD|1|5|C|2824
6MTD|1|5|A|2825
6MTD|1|5|U|2826
6MTD|1|5|G|2827
6MTD|1|5|U|2828
6MTD|1|5|U|2829
*
6MTD|1|5|A|3856
6MTD|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31