J4_6MTD_007
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6MTD_007 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.084
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTD|1|5|G|3634
6MTD|1|5|A|3635
6MTD|1|5|C|3636
6MTD|1|5|U|3637
6MTD|1|5|G|3638
*
6MTD|1|5|C|3650
6MTD|1|5|A|3651
6MTD|1|5|A|3652
6MTD|1|5|A|3653
6MTD|1|5|G|3654
*
6MTD|1|5|U|3690
6MTD|1|5|G|3691
6MTD|1|5|A|3692
6MTD|1|5|U|3693
6MTD|1|5|U|3694
*
6MTD|1|5|A|3821
6MTD|1|5|U|3822
6MTD|1|5|G|3823
6MTD|1|5|A|3824
6MTD|1|5|A2M|3825
6MTD|1|5|C|3826
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- uL2
- Chain n
- eL41
- Chain p
- eL43
Coloring options: