3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GACUG*CAAAG*UGAUU*AUGA(A2M)C
Length
21 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6MTD_007 not in the Motif Atlas
Homologous match to J4_8C3A_006
Geometric discrepancy: 0.084
The information below is about J4_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6MTD|1|5|G|3634
6MTD|1|5|A|3635
6MTD|1|5|C|3636
6MTD|1|5|U|3637
6MTD|1|5|G|3638
*
6MTD|1|5|C|3650
6MTD|1|5|A|3651
6MTD|1|5|A|3652
6MTD|1|5|A|3653
6MTD|1|5|G|3654
*
6MTD|1|5|U|3690
6MTD|1|5|G|3691
6MTD|1|5|A|3692
6MTD|1|5|U|3693
6MTD|1|5|U|3694
*
6MTD|1|5|A|3821
6MTD|1|5|U|3822
6MTD|1|5|G|3823
6MTD|1|5|A|3824
6MTD|1|5|A2M|3825
6MTD|1|5|C|3826

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 9
Small subunit ribosomal RNA; SSU rRNA
Chain A
uL2
Chain n
eL41
Chain p
eL43

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1834 s