J4_6MTD_013
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6MTD|1|9|A|672, 6MTD|1|9|A|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6MTD_013 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0828
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6MTD|1|9|A|671
6MTD|1|9|A|672
6MTD|1|9|G|673
*
6MTD|1|9|C|1032
6MTD|1|9|G|1033
6MTD|1|9|A|1034
6MTD|1|9|A|1035
6MTD|1|9|A|1036
6MTD|1|9|G|1037
*
6MTD|1|9|C|1078
6MTD|1|9|C|1079
6MTD|1|9|A|1080
6MTD|1|9|U|1081
6MTD|1|9|A|1082
6MTD|1|9|A|1083
6MTD|1|9|A|1084
6MTD|1|9|C|1085
6MTD|1|9|G|1086
6MTD|1|9|A|1087
6MTD|1|9|U|1088
6MTD|1|9|G|1089
*
6MTD|1|9|U|1160
6MTD|1|9|U|1161
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- uS17
- Chain NN
- uS15
- Chain OO
- uS11
- Chain WW
- uS8
- Chain XX
- uS12
- Chain aa
- eS26
- Chain n
- eL41
- Chain p
- eL43
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