J4_6N1D_006

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

6N1D|1|A23S|U|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4474

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6N1D|1|A23S|C|601
6N1D|1|A23S|G|602
6N1D|1|A23S|A|603
6N1D|1|A23S|G|604
*
6N1D|1|A23S|C|624
6N1D|1|A23S|G|625
6N1D|1|A23S|U|626
6N1D|1|A23S|A|627
6N1D|1|A23S|G|628
*
6N1D|1|A23S|C|635
6N1D|1|A23S|G|636
6N1D|1|A23S|A|637
6N1D|1|A23S|G|638
*
6N1D|1|A23S|C|650
6N1D|1|A23S|G|651
6N1D|1|A23S|U|652
6N1D|1|A23S|C|653
6N1D|1|A23S|U|654
6N1D|1|A23S|A|655
6N1D|1|A23S|G|656

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL15

50S ribosomal protein L15

Chain AL35

50S ribosomal protein L35