J4_6N1D_007

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6N1D|1|A23S|G|1271, 6N1D|1|A23S|A|1272, 6N1D|1|A23S|U|1273, 6N1D|1|A23S|A|1274, 6N1D|1|A23S|A|1275, 6N1D|1|A23S|C|1646, 6N1D|1|A23S|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_007 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.1393

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6N1D|1|A23S|C|1270
6N1D|1|A23S|G|1271
6N1D|1|A23S|A|1272
6N1D|1|A23S|U|1273
6N1D|1|A23S|A|1274
6N1D|1|A23S|A|1275
6N1D|1|A23S|A|1276
*
6N1D|1|A23S|U|1294
6N1D|1|A23S|C|1295
*
6N1D|1|A23S|G|1645
6N1D|1|A23S|C|1646
6N1D|1|A23S|G|1647
6N1D|1|A23S|C|1648
*
6N1D|1|A23S|G|2009
6N1D|1|A23S|G|2010

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL17

50S ribosomal protein L17

Chain AL22

50S ribosomal protein L22

Chain AL32

50S ribosomal protein L32