J4_6N1D_012

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6N1D|1|A23S|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1516

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6N1D|1|A23S|U|1833
6N1D|1|A23S|U|1834
6N1D|1|A23S|G|1835
*
6N1D|1|A23S|C|1905
6N1D|1|A23S|G|1906
*
6N1D|1|A23S|C|1924
6N1D|1|A23S|C|1925
6N1D|1|A23S|U|1926
6N1D|1|A23S|A|1927
6N1D|1|A23S|A|1928
6N1D|1|A23S|G|1929
6N1D|1|A23S|G|1930
6N1D|1|A23S|U|1931
6N1D|1|A23S|A|1932
6N1D|1|A23S|G|1933
*
6N1D|1|A23S|C|1967
6N1D|1|A23S|G|1968
6N1D|1|A23S|A|1969
6N1D|1|A23S|A|1970
6N1D|1|A23S|A|1971
6N1D|1|A23S|A|1972

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

50S ribosomal protein L2