J4_6N1D_023

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6N1D|1|B23S|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6N1D_023 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1061

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|B23S|G|1310
6N1D|1|B23S|G|1311
6N1D|1|B23S|U|1312
6N1D|1|B23S|U|1313
6N1D|1|B23S|C|1314
*
6N1D|1|B23S|G|1338
6N1D|1|B23S|G|1339
6N1D|1|B23S|U|1340
6N1D|1|B23S|U|1341
6N1D|1|B23S|A|1342
6N1D|1|B23S|G|1343
*
6N1D|1|B23S|C|1404
6N1D|1|B23S|U|1405
*
6N1D|1|B23S|A|1597
6N1D|1|B23S|C|1598
6N1D|1|B23S|C|1599
6N1D|1|B23S|C|1600
6N1D|1|B23S|G|1601
6N1D|1|B23S|U|1602
6N1D|1|B23S|A|1603
6N1D|1|B23S|C|1604

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL23

50S ribosomal protein L23

Chain BL29

50S ribosomal protein L29

Chain BL34

50S ribosomal protein L34