J4_6N2V_001
3D structure
- PDB id
- 6N2V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manganese riboswitch from Xanthmonas oryzae bound to Mn(II)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.85 Å
Loop
- Sequence
- CUG*CGC*GA*UCUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65052.1
- Basepair signature
- cWW-cWW-cWW-F-cWW-tWS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6N2V|1|A|C|16
6N2V|1|A|U|17
6N2V|1|A|G|18
*
6N2V|1|A|C|35
6N2V|1|A|G|36
6N2V|1|A|C|37
*
6N2V|1|A|G|73
6N2V|1|A|A|74
*
6N2V|1|A|U|83
6N2V|1|A|C|84
6N2V|1|A|U|85
6N2V|1|A|G|86
Current chains
- Chain A
- X. oryzae Mn riboswitch optimized construct
Nearby chains
- Chain B
- X. oryzae Mn riboswitch optimized construct
Coloring options: